MLOC_60307 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.312346.373125.21545.28767
LEAShoots from the seedlings (10 cm shoot stage)2.362891.079841.517351.42654
INF1Young developing inflorescences (5mm)29.552533.328632.535825.0066
INF2Developing inflorescences (1-1.5 cm)40.431846.668938.489143.5553
ROORoots from the seedlings (10 cm shoot stage)1.421695.017254.261664.95515
NODDeveloping tillers at six leaf stage, 3rd internode0.05570970.1186690.09189340.369266
CAR5Developing grain, bracts removed (5 DPA)5.882466.48265.8075.48503
CAR15Developing grain, bracts removed (15 DPA)1.510540.8573951.459482.75094



CDS Structure of MLOC_60307






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60307.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60307.1CUST_14110_PI427708080AvailableAvailablecontig_44267 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g12480.1 +2 0.0 622 331/522 (63%) 13104.m01146 protein pumilio-family RNA binding repeat containing protein, expressed
TAIR PP10 AT2G29190.2 +2 3e-131 421 217/415 (52%) | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972