MLOC_60298 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.264520.514820.889317.7411
LEAShoots from the seedlings (10 cm shoot stage)27.234216.82514.51715.0371
INF1Young developing inflorescences (5mm)1.982323.390683.665012.23028
INF2Developing inflorescences (1-1.5 cm)2.805051.451091.984742.03886
ROORoots from the seedlings (10 cm shoot stage)27.045625.862835.670827.5596
NODDeveloping tillers at six leaf stage, 3rd internode57.642633.140731.345686.8916
CAR5Developing grain, bracts removed (5 DPA)12.207313.442814.75911.4364
CAR15Developing grain, bracts removed (15 DPA)83.636784.427565.8906173.437



CDS Structure of MLOC_60298






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60298.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60298.1CUST_12858_PI427708083AvailableAvailablecontig_44262 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g54870.1 -2 2e-30 122 61/69 (88%) 13104.m05682 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT1G14340.1 -2 1e-14 75 37/60 (62%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244