- Predicted Gene MLOC_60274
MLOC_60274 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 10.8383 | 16.4245 | 15.5399 | 14.7151 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 12.3805 | 9.90007 | 10.6397 | 9.2186 |
INF1 | Young developing inflorescences (5mm) | 38.2176 | 39.0087 | 31.4664 | 30.4237 |
INF2 | Developing inflorescences (1-1.5 cm) | 44.1454 | 46.3825 | 39.8601 | 47.2623 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.03963 | 14.4455 | 10.5007 | 14.891 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.8593 | 16.0321 | 14.6499 | 50.2536 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.7666 | 14.8034 | 14.9904 | 13.7031 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.48774 | 3.94613 | 4.14801 | 9.85595 |
CDS Structure of MLOC_60274
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_60274.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g06010.1 |
-3 |
0.0 |
1149 |
627/907 (69%) |
13111.m00592 protein helix-loop-helix DNA-binding protein, putative, expressed |
TAIR PP10 |
AT2G27230.2 |
-3 |
9e-84 |
290 |
171/343 (50%) |
| Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650 |