MLOC_60274 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.838316.424515.539914.7151
LEAShoots from the seedlings (10 cm shoot stage)12.38059.9000710.63979.2186
INF1Young developing inflorescences (5mm)38.217639.008731.466430.4237
INF2Developing inflorescences (1-1.5 cm)44.145446.382539.860147.2623
ROORoots from the seedlings (10 cm shoot stage)7.0396314.445510.500714.891
NODDeveloping tillers at six leaf stage, 3rd internode10.859316.032114.649950.2536
CAR5Developing grain, bracts removed (5 DPA)13.766614.803414.990413.7031
CAR15Developing grain, bracts removed (15 DPA)4.487743.946134.148019.85595



CDS Structure of MLOC_60274






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60274.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369500NoneNoneNoneNone
MLOC_60274.1CUST_4266_PI427708080AvailableAvailablecontig_44246 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g06010.1 -3 0.0 1149 627/907 (69%) 13111.m00592 protein helix-loop-helix DNA-binding protein, putative, expressed
TAIR PP10 AT2G27230.2 -3 9e-84 290 171/343 (50%) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650