- Predicted Gene MLOC_60261
MLOC_60261 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.39884 | 2.3065 | 2.28047 | 2.3577 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.45594 | 1.52828 | 1.64582 | 1.33207 |
INF1 | Young developing inflorescences (5mm) | 6.58474 | 6.2853 | 7.29012 | 5.46545 |
INF2 | Developing inflorescences (1-1.5 cm) | 5.63605 | 5.83232 | 6.3464 | 6.26512 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.994805 | 2.35393 | 2.11007 | 2.55006 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.371769 | 0.565987 | 0.752803 | 1.87914 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.45902 | 2.65105 | 2.82267 | 2.50183 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.712199 | 0.855175 | 0.467031 | 1.60168 |
CDS Structure of MLOC_60261
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_60261.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g56960.1 |
+3 |
0.0 |
717 |
399/526 (76%) |
13103.m06236 protein PPR repeat domain containing protein, putative, expressed |
TAIR PP10 |
AT5G14080.1 |
+3 |
1e-110 |
355 |
183/449 (41%) |
Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4543265-4545256 REVERSE LENGTH=634 |