MLOC_60245 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.004117.418221.661819.8906
LEAShoots from the seedlings (10 cm shoot stage)24.41383.201297.830349.65541
INF1Young developing inflorescences (5mm)12.97467.810689.928159.4012
INF2Developing inflorescences (1-1.5 cm)1.256030.9964612.622151.76657
ROORoots from the seedlings (10 cm shoot stage)8.980918.9700112.561611.0965
NODDeveloping tillers at six leaf stage, 3rd internode21.43894.200230.4735937.31196
CAR5Developing grain, bracts removed (5 DPA)7.099686.087044.624986.32729
CAR15Developing grain, bracts removed (15 DPA)0.158630.07029270.2011560.361058



CDS Structure of MLOC_60245






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60245.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357514NoneNoneNoneNone
MLOC_60245.2CUST_4264_PI427708080AvailableAvailablecontig_442233 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41960.1 +2 4e-132 392 207/350 (59%) 13104.m04127 protein NADP-dependent oxidoreductase, putative, expressed
TAIR PP10 AT5G16990.1 +2 3e-129 384 204/349 (58%) Zinc-binding dehydrogenase family protein | chr5:5581831-5583849 REVERSE LENGTH=343