MLOC_60208 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.17733.419729.796633.2896
LEAShoots from the seedlings (10 cm shoot stage)85.501159.200870.516562.8995
INF1Young developing inflorescences (5mm)40.703648.696450.675843.1234
INF2Developing inflorescences (1-1.5 cm)17.954314.080614.676818.0782
ROORoots from the seedlings (10 cm shoot stage)8.4941510.460423.571915.0992
NODDeveloping tillers at six leaf stage, 3rd internode27.12311.23579.273733.4385
CAR5Developing grain, bracts removed (5 DPA)26.923928.390525.792529.0241
CAR15Developing grain, bracts removed (15 DPA)14.364716.957919.302342.0682



CDS Structure of MLOC_60208






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60208.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249640.1NoneNoneNoneNone
MLOC_60208.1CUST_4258_PI427708080AvailableAvailablecontig_442131 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02060.1 +1 1e-74 230 110/146 (75%) 13105.m00159 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
TAIR PP10 AT2G28900.1 +1 4e-50 166 75/130 (58%) | Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 | outer plastid envelope protein 16-1 | chr2:12414423-12415459 REVERSE LENGTH=148