MLOC_60196 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains125.0885.821986.933695.1278
LEAShoots from the seedlings (10 cm shoot stage)45.207225.191844.30931.4253
INF1Young developing inflorescences (5mm)147.467150.571150.214126.394
INF2Developing inflorescences (1-1.5 cm)77.485682.084695.003993.3182
ROORoots from the seedlings (10 cm shoot stage)87.299974.465781.72589.4867
NODDeveloping tillers at six leaf stage, 3rd internode5.240284.292219.9702715.9846
CAR5Developing grain, bracts removed (5 DPA)75.671181.877482.005980.8838
CAR15Developing grain, bracts removed (15 DPA)19.087419.154416.567844.4267



CDS Structure of MLOC_60196






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60196.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357394NoneNoneNoneNone
MLOC_60196.3CUST_342_PI427708083AvailableAvailablecontig_442107 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g37862.1 +2 1e-114 338 188/238 (79%) 13102.m04150 protein 60S ribosomal protein L6, putative, expressed
TAIR PP10 AT1G18540.1 +2 6e-81 251 135/234 (58%) Ribosomal protein L6 family protein | chr1:6377448-6378548 REVERSE LENGTH=233