MLOC_60174 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.141670.08977060.1504310.119422
LEAShoots from the seedlings (10 cm shoot stage)0.04401740.1642420.05909460.0865887
INF1Young developing inflorescences (5mm)0.1050010.2322260.1843680.172084
INF2Developing inflorescences (1-1.5 cm)00.0228080.0267060.0600874
ROORoots from the seedlings (10 cm shoot stage)5.605013.320211.667123.49617
NODDeveloping tillers at six leaf stage, 3rd internode0.6505830.4772250.05311250.751388
CAR5Developing grain, bracts removed (5 DPA)0.1762750.08473450.05266570.110122
CAR15Developing grain, bracts removed (15 DPA)0.0175604000.0595054



CDS Structure of MLOC_60174






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60174.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367967NoneNoneNoneNone
MLOC_60174.1CUST_4256_PI427708080AvailableAvailablecontig_442068 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g37120.1 +2 0.0 630 337/408 (83%) 13109.m03675 protein pyridoxal-dependent decarboxylase protein, putative, expressed
TAIR PP10 AT5G11880.1 +2 3e-13 72 101/383 (26%) Pyridoxal-dependent decarboxylase family protein | chr5:3827806-3829942 REVERSE LENGTH=489