MLOC_60167 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.414912.43912.022412.1105
LEAShoots from the seedlings (10 cm shoot stage)7.247722.40732.195313.63847
INF1Young developing inflorescences (5mm)35.686632.535432.415827.3912
INF2Developing inflorescences (1-1.5 cm)23.067522.589123.17724.7965
ROORoots from the seedlings (10 cm shoot stage)2.565747.70716.010428.69936
NODDeveloping tillers at six leaf stage, 3rd internode1.183151.642325.078888.00348
CAR5Developing grain, bracts removed (5 DPA)4.407834.947645.606614.88925
CAR15Developing grain, bracts removed (15 DPA)2.85812.636142.198325.74794



CDS Structure of MLOC_60167






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60167.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60167.2CUST_14090_PI427708080AvailableAvailablecontig_442059 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g30340.2 +1 0.0 534 331/442 (75%) 13105.m03096 protein expressed protein
TAIR PP10 AT3G59670.1 +1 5e-26 112 114/367 (31%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:22040485-22042380 FORWARD LENGTH=517