MLOC_60149 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.03289990.137630.04362910.093433
LEAShoots from the seedlings (10 cm shoot stage)0.1038070.3092370.2160720.194914
INF1Young developing inflorescences (5mm)0.08603770.2877560.03647860.124827
INF2Developing inflorescences (1-1.5 cm)0.02426640.1314430.03382570.086858
ROORoots from the seedlings (10 cm shoot stage)0.6600641.228540.996371.45818
NODDeveloping tillers at six leaf stage, 3rd internode00.02844660.1664850.259675
CAR5Developing grain, bracts removed (5 DPA)0.08601520.1548840.06437270.106798
CAR15Developing grain, bracts removed (15 DPA)0.03199610.032530300.0986399



CDS Structure of MLOC_60149






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60149.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60149.1CUST_8242_PI427708083AvailableAvailablecontig_442027 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g06570.2 +1 2e-159 470 275/468 (59%) 13102.m00724 protein CAMK_KIN1/SNF1/Nim1_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT5G07070.1 +1 7e-117 358 202/439 (46%) | Symbols: CIPK2, SnRK3.2 | CBL-interacting protein kinase 2 | chr5:2196743-2198113 REVERSE LENGTH=456