MLOC_60115 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.153564.873435.894035.12575
LEAShoots from the seedlings (10 cm shoot stage)15.42279.148379.67149.9812
INF1Young developing inflorescences (5mm)11.271313.048213.083811.0219
INF2Developing inflorescences (1-1.5 cm)4.028473.516573.5264.1246
ROORoots from the seedlings (10 cm shoot stage)4.721094.080443.04444.9548
NODDeveloping tillers at six leaf stage, 3rd internode107.90984.787358.7904271.69
CAR5Developing grain, bracts removed (5 DPA)11.560813.725912.620712.6847
CAR15Developing grain, bracts removed (15 DPA)2.996032.109222.909666.44449



CDS Structure of MLOC_60115






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60115.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367061NoneNoneNoneNone
MLOC_60115.1CUST_4248_PI427708080AvailableAvailablecontig_44197 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g31502.1 -2 1e-154 448 236/333 (71%) 13109.m03157 protein dehydrogenase, putative, expressed
TAIR PP10 AT1G76470.1 -2 3e-93 290 168/317 (53%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:28689955-28691405 REVERSE LENGTH=325