- Predicted Gene MLOC_60110
MLOC_60110 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 22.9049 | 25.6976 | 25.6034 | 27.6122 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 15.5008 | 11.8586 | 13.9015 | 12.6457 |
| INF1 | Young developing inflorescences (5mm) | 27.0229 | 27.2841 | 27.2778 | 24.6828 |
| INF2 | Developing inflorescences (1-1.5 cm) | 17.8322 | 23.0995 | 22.7622 | 24.2582 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 18.3052 | 21.5413 | 20.9815 | 27.7026 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 22.2304 | 16.0545 | 10.9594 | 54.945 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 32.1762 | 37.6082 | 36.7835 | 36.4215 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 7.21726 | 6.03641 | 6.61799 | 16.2921 |
CDS Structure of MLOC_60110
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_60110.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os08g40140.1 |
-2 |
0.0 |
596 |
278/308 (90%) |
13108.m04288 protein geranylgeranyl transferase type-2 subunit beta, putative, expressed |
| TAIR PP10 |
AT5G12210.1 |
-2 |
0.0 |
514 |
238/307 (78%) |
| Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl transferase beta subunit 1 | chr5:3947254-3949595 FORWARD LENGTH=321 |
