MLOC_60108 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.5613714.859513.703312.4372
LEAShoots from the seedlings (10 cm shoot stage)11.951315.168914.315110.9421
INF1Young developing inflorescences (5mm)35.31339.336341.768132.041
INF2Developing inflorescences (1-1.5 cm)52.620846.981346.531851.6789
ROORoots from the seedlings (10 cm shoot stage)26.885227.984729.891330.5342
NODDeveloping tillers at six leaf stage, 3rd internode9.0056313.42887.8026135.4613
CAR5Developing grain, bracts removed (5 DPA)40.421637.042737.649835.6365
CAR15Developing grain, bracts removed (15 DPA)5.318644.629845.2068811.7166



CDS Structure of MLOC_60108






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60108.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365376NoneNoneNoneNone
MLOC_60108.1CUST_4246_PI427708080AvailableAvailablecontig_441964 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g40150.2 +1 6e-117 365 265/374 (71%) 13108.m04291 protein AT hook motif domain containing protein, expressed
TAIR PP10 AT2G33620.4 +1 9e-57 200 132/210 (63%) AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351