MLOC_60101 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.906327.190826.290332.5206
LEAShoots from the seedlings (10 cm shoot stage)11.96919.687418.62969.45975
INF1Young developing inflorescences (5mm)38.308838.304838.373836.9527
INF2Developing inflorescences (1-1.5 cm)33.198633.272732.581342.7314
ROORoots from the seedlings (10 cm shoot stage)17.852623.031823.711833.0429
NODDeveloping tillers at six leaf stage, 3rd internode2.104541.939892.883177.94689
CAR5Developing grain, bracts removed (5 DPA)26.265727.873427.592732.766
CAR15Developing grain, bracts removed (15 DPA)9.756328.029267.7353523.2457



CDS Structure of MLOC_60101






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60101.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249297.1NoneNoneNoneNone
MLOC_60101.1CUST_4245_PI427708080AvailableAvailablecontig_44194 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46440.1 -3 5e-161 473 267/394 (68%) 13107.m04899 protein ribosomal protein, putative, expressed
TAIR PP10 AT3G49080.1 -3 5e-109 338 170/264 (64%) Ribosomal protein S5 domain 2-like superfamily protein | chr3:18194500-18196657 REVERSE LENGTH=430