MLOC_60099 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.46399.514339.0652410.2379
LEAShoots from the seedlings (10 cm shoot stage)3.75791.519492.573392.35259
INF1Young developing inflorescences (5mm)30.051137.404839.071127.8953
INF2Developing inflorescences (1-1.5 cm)28.825825.80726.296529.048
ROORoots from the seedlings (10 cm shoot stage)3.053969.869437.6413910.3671
NODDeveloping tillers at six leaf stage, 3rd internode0.3051960.2613980.4694491.05947
CAR5Developing grain, bracts removed (5 DPA)5.386726.140736.063795.69715
CAR15Developing grain, bracts removed (15 DPA)3.703372.719481.965026.61149



CDS Structure of MLOC_60099






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60099.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60099.1CUST_8236_PI427708083AvailableAvailablecontig_44190 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01910.1 -2 3e-75 253 128/138 (93%) 13105.m00136 protein pumilio-family RNA binding protein, putative, expressed
TAIR PP10 AT2G29140.1 -2 3e-62 216 105/132 (80%) | Symbols: APUM3, PUM3 | pumilio 3 | chr2:12531392-12535060 FORWARD LENGTH=964