MLOC_60080 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.874941.629161.762951.31447
LEAShoots from the seedlings (10 cm shoot stage)1.266650.771541.900670.866489
INF1Young developing inflorescences (5mm)4.824954.821785.16643.01268
INF2Developing inflorescences (1-1.5 cm)3.603123.642923.46312.9092
ROORoots from the seedlings (10 cm shoot stage)3.004141.681722.711681.78786
NODDeveloping tillers at six leaf stage, 3rd internode0.1441180.07370090.3570430.299222
CAR5Developing grain, bracts removed (5 DPA)2.469222.502332.62161.71473
CAR15Developing grain, bracts removed (15 DPA)0.7728930.9484121.180081.44586



CDS Structure of MLOC_60080






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60080.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60080.2CUST_12855_PI427708083AvailableAvailablecontig_44175 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g30240.1 -3 1e-18 92 58/147 (39%) 13105.m03084 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT1G69620.1 -1 4e-12 59 29/42 (69%) | Symbols: RPL34 | ribosomal protein L34 | chr1:26189900-26191081 FORWARD LENGTH=119