MLOC_60073 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.8869610.448310.505610.5867
LEAShoots from the seedlings (10 cm shoot stage)612.4481091.961410.4837.405
INF1Young developing inflorescences (5mm)22.028422.03731.590524.3136
INF2Developing inflorescences (1-1.5 cm)20.748821.133827.313627.8051
ROORoots from the seedlings (10 cm shoot stage)2.870465.4788113.05447.3011
NODDeveloping tillers at six leaf stage, 3rd internode590.7431139.761576.63156.64
CAR5Developing grain, bracts removed (5 DPA)150159.018146.284168.038
CAR15Developing grain, bracts removed (15 DPA)29.900838.223533.441994.0835



CDS Structure of MLOC_60073






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60073.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354034NoneNoneNoneNone
MLOC_60073.2CUST_4239_PI427708080AvailableAvailablecontig_44168 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g38960.1 -3 6e-161 457 215/245 (88%) 13107.m04032 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT3G61470.1 -3 4e-147 421 197/223 (88%) | Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257