MLOC_60022 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains41.357632.300233.713934.7122
LEAShoots from the seedlings (10 cm shoot stage)1.276731.245842.092591.18159
INF1Young developing inflorescences (5mm)0.05750360.1223270.01813690.0653048
INF2Developing inflorescences (1-1.5 cm)0.06450550.04652480.1686660.0977605
ROORoots from the seedlings (10 cm shoot stage)20.567117.882111.428218.3544
NODDeveloping tillers at six leaf stage, 3rd internode0.8353683.901884.6362310.0305
CAR5Developing grain, bracts removed (5 DPA)0.2007830.05783030.1843070.152772
CAR15Developing grain, bracts removed (15 DPA)0.01255850.015028300.0467051



CDS Structure of MLOC_60022






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60022.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365232NoneNoneNoneNone
MLOC_60022.1CUST_4231_PI427708080AvailableAvailablecontig_44129 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g20090.1 -2 0.0 865 447/552 (81%) 13109.m01900 protein L-ascorbate oxidase precursor, putative, expressed
TAIR PP10 AT4G39830.1 -2 0.0 655 319/545 (59%) Cupredoxin superfamily protein | chr4:18479103-18481184 FORWARD LENGTH=582