- Predicted Gene MLOC_60000
MLOC_60000 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 5.21003 | 4.36913 | 4.26283 | 5.33176 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.24224 | 0.551009 | 0.370764 | 0.699354 |
INF1 | Young developing inflorescences (5mm) | 2.57139 | 1.38876 | 2.00698 | 1.94405 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.52867 | 4.24032 | 4.14589 | 4.82077 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.16551 | 1.13241 | 2.133 | 1.8127 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.85297 | 1.63984 | 0.460683 | 3.92338 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.58786 | 2.04239 | 1.55107 | 1.92135 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.410483 | 0.337699 | 0.355769 | 0.981198 |
CDS Structure of MLOC_60000
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_60000.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g13570.1 |
-2 |
6e-150 |
463 |
223/277 (81%) |
13103.m01574 protein glycosyl hydrolases family 16, putative, expressed |
TAIR PP10 |
AT1G14720.1 |
-2 |
6e-113 |
362 |
169/272 (62%) |
| Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xyloglucan endotransglucosylase/hydrolase 28 | chr1:5066806-5068466 REVERSE LENGTH=332 |