MLOC_60000 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.210034.369134.262835.33176
LEAShoots from the seedlings (10 cm shoot stage)1.242240.5510090.3707640.699354
INF1Young developing inflorescences (5mm)2.571391.388762.006981.94405
INF2Developing inflorescences (1-1.5 cm)3.528674.240324.145894.82077
ROORoots from the seedlings (10 cm shoot stage)1.165511.132412.1331.8127
NODDeveloping tillers at six leaf stage, 3rd internode1.852971.639840.4606833.92338
CAR5Developing grain, bracts removed (5 DPA)1.587862.042391.551071.92135
CAR15Developing grain, bracts removed (15 DPA)0.4104830.3376990.3557690.981198



CDS Structure of MLOC_60000






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60000.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376480NoneNoneNoneNone
MLOC_60000.1CUST_4229_PI427708080AvailableAvailablecontig_44102 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g13570.1 -2 6e-150 463 223/277 (81%) 13103.m01574 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT1G14720.1 -2 6e-113 362 169/272 (62%) | Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xyloglucan endotransglucosylase/hydrolase 28 | chr1:5066806-5068466 REVERSE LENGTH=332