MLOC_600 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains02.0992803.12243
LEAShoots from the seedlings (10 cm shoot stage)3.58833.889256.991833.52979
INF1Young developing inflorescences (5mm)3.84091.969792.463772.44756
INF2Developing inflorescences (1-1.5 cm)3.480893.212892.497514.48198
ROORoots from the seedlings (10 cm shoot stage)4.0811307.45242.68776
NODDeveloping tillers at six leaf stage, 3rd internode3.295338.469749.5417234.6459
CAR5Developing grain, bracts removed (5 DPA)10.0542.172452.367315.241
CAR15Developing grain, bracts removed (15 DPA)3.949714.16253012.6539



CDS Structure of MLOC_600






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_600.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_600.1CUST_8219_PI427708083AvailableAvailablecontig_1043867 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 -3 1e-19 81 37/39 (95%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 -3 1e-14 66 31/40 (78%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358