MLOC_59994 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9687920.2885910.2445370.466855
LEAShoots from the seedlings (10 cm shoot stage)0.096086300.1162910.0976301
INF1Young developing inflorescences (5mm)0.0937740.0937920.03994740.0782473
INF2Developing inflorescences (1-1.5 cm)0.3471770.06615480.1228390.216526
ROORoots from the seedlings (10 cm shoot stage)0.1887720.1004630.1068920.153523
NODDeveloping tillers at six leaf stage, 3rd internode0.12120700.04707940.0379594
CAR5Developing grain, bracts removed (5 DPA)0.5698070.8707260.8117360.973876
CAR15Developing grain, bracts removed (15 DPA)1540.931333.821401.374052.19



CDS Structure of MLOC_59994






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59994.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250500.1NoneNoneNoneNone
MLOC_59994.1CUST_4227_PI427708080AvailableAvailablecontig_44095 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g46100.1 -2 2e-135 410 269/474 (57%) 13103.m04955 protein cupin domain containing protein, expressed
TAIR PP10 AT3G22640.1 -2 5e-35 138 119/425 (28%) | Symbols: PAP85 | cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486