MLOC_59970 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3778380.3009120.5861020.387395
LEAShoots from the seedlings (10 cm shoot stage)0.1862740.35138200.236474
INF1Young developing inflorescences (5mm)0.3251710.3560280.4200710.305251
INF2Developing inflorescences (1-1.5 cm)0.316220.2506990.3350850.326458
ROORoots from the seedlings (10 cm shoot stage)0.2193810.2490770.1156430.28353
NODDeveloping tillers at six leaf stage, 3rd internode0.06037270.2404060.5799550.964526
CAR5Developing grain, bracts removed (5 DPA)35.610536.665838.602837.0125
CAR15Developing grain, bracts removed (15 DPA)49.238454.031142.0454112.278



CDS Structure of MLOC_59970






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59970.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59970.2CUST_14062_PI427708080AvailableAvailablecontig_44074 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g49150.3 -3 4e-75 239 129/213 (61%) 13102.m05562 protein RNA polymerase Rpb4, putative, expressed
TAIR PP10 AT4G15950.1 -3 2e-27 109 51/122 (42%) | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, Rpb4, core protein | chr4:9040743-9041994 FORWARD LENGTH=205