- Predicted Gene MLOC_59966
MLOC_59966 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_59966_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 10.8567 | 19.7962 | 18.4496 | 19.0883 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 20.9196 | 17.0713 | 15.5896 | 17.1798 |
INF1 | Young developing inflorescences (5mm) | 42.8026 | 43.4998 | 39.9402 | 37.3816 |
INF2 | Developing inflorescences (1-1.5 cm) | 39.4223 | 46.6818 | 41.1639 | 50.2924 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.65157 | 13.8074 | 12.9752 | 18.2431 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.3923 | 12.4377 | 14.8821 | 49.0602 |
CAR5 | Developing grain, bracts removed (5 DPA) | 31.8244 | 30.3659 | 34.399 | 33.7069 |
CAR15 | Developing grain, bracts removed (15 DPA) | 18.1764 | 15.5034 | 15.1099 | 39.2991 |
CDS Structure of MLOC_59966
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59966.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g29450.1 |
-1 |
0.0 |
671 |
327/360 (91%) |
13107.m02958 protein expressed protein |
TAIR PP10 |
AT5G08450.3 |
-1 |
0.0 |
535 |
255/365 (70%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918 |