MLOC_59966 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.856719.796218.449619.0883
LEAShoots from the seedlings (10 cm shoot stage)20.919617.071315.589617.1798
INF1Young developing inflorescences (5mm)42.802643.499839.940237.3816
INF2Developing inflorescences (1-1.5 cm)39.422346.681841.163950.2924
ROORoots from the seedlings (10 cm shoot stage)6.6515713.807412.975218.2431
NODDeveloping tillers at six leaf stage, 3rd internode10.392312.437714.882149.0602
CAR5Developing grain, bracts removed (5 DPA)31.824430.365934.39933.7069
CAR15Developing grain, bracts removed (15 DPA)18.176415.503415.109939.2991



CDS Structure of MLOC_59966






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59966.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59966.3CUST_14061_PI427708080AvailableAvailablecontig_44071 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29450.1 -1 0.0 671 327/360 (91%) 13107.m02958 protein expressed protein
TAIR PP10 AT5G08450.3 -1 0.0 535 255/365 (70%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918