MLOC_59964 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains105.69688.648791.438995.4167
LEAShoots from the seedlings (10 cm shoot stage)175.11126.444177.316129.041
INF1Young developing inflorescences (5mm)54.934950.126157.168148.0703
INF2Developing inflorescences (1-1.5 cm)50.089463.066862.886165.7613
ROORoots from the seedlings (10 cm shoot stage)78.257172.514853.031579.6042
NODDeveloping tillers at six leaf stage, 3rd internode90.6531153.2342.7193363.475
CAR5Developing grain, bracts removed (5 DPA)103.71598.241896.809499.5089
CAR15Developing grain, bracts removed (15 DPA)11.1279.1788715.177127.701



CDS Structure of MLOC_59964






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59964.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250709.1NoneNoneNoneNone
MLOC_59964.1CUST_4222_PI427708080AvailableAvailablecontig_44069 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05670.1 +3 0.0 580 267/291 (92%) 13101.m00549 protein 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
TAIR PP10 AT3G55360.1 +3 0.0 525 239/291 (82%) | Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr3:20521186-20522856 REVERSE LENGTH=310