- Predicted Gene MLOC_59959
MLOC_59959 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 8.74023 | 8.54444 | 8.77303 | 9.43419 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 19.3683 | 22.3137 | 24.612 | 19.9087 |
INF1 | Young developing inflorescences (5mm) | 0.384721 | 0.169107 | 0.354019 | 0.273846 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.42648 | 0.604172 | 0.634037 | 0.675847 |
ROO | Roots from the seedlings (10 cm shoot stage) | 16.9043 | 12.1105 | 11.617 | 16.3612 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.82414 | 5.31764 | 15.704 | 26.1673 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.55935 | 4.65229 | 4.87712 | 4.80598 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.05895 | 3.45287 | 2.43118 | 8.98234 |
CDS Structure of MLOC_59959
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59959.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g22770.1 |
+2 |
7e-169 |
490 |
271/405 (67%) |
13103.m02746 protein CCT/B-box zinc finger protein, putative, expressed |
TAIR PP10 |
AT2G47890.2 |
+2 |
3e-32 |
125 |
72/181 (40%) |
B-box type zinc finger protein with CCT domain | chr2:19608245-19609036 FORWARD LENGTH=237 |