MLOC_59925 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.437645.138165.076694.49492
LEAShoots from the seedlings (10 cm shoot stage)34.350986.621846.891533.2074
INF1Young developing inflorescences (5mm)0.5329460.7883680.489250.372598
INF2Developing inflorescences (1-1.5 cm)0.8675111.166281.213180.855051
ROORoots from the seedlings (10 cm shoot stage)6.106878.122076.738966.56917
NODDeveloping tillers at six leaf stage, 3rd internode5.321349.5662827.227229.346
CAR5Developing grain, bracts removed (5 DPA)5.750617.51466.648354.47222
CAR15Developing grain, bracts removed (15 DPA)0.6629251.15450.9063781.4113



CDS Structure of MLOC_59925






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59925.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59925.1CUST_12851_PI427708083AvailableAvailablecontig_440426 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g37910.2 +3 6e-26 111 51/60 (85%) 13101.m03866 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT4G32940.1 +3 1e-19 93 41/61 (67%) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494