- Predicted Gene MLOC_59906
MLOC_59906 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_59906_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.28228 | 5.03887 | 4.10793 | 4.84835 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 6.81736 | 1.55129 | 3.23768 | 3.43993 |
INF1 | Young developing inflorescences (5mm) | 33.8502 | 46.2622 | 39.2383 | 37.4381 |
INF2 | Developing inflorescences (1-1.5 cm) | 28.5411 | 20.6561 | 24.4542 | 28.1378 |
ROO | Roots from the seedlings (10 cm shoot stage) | 8.82059 | 9.40448 | 15.2667 | 12.5415 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.268969 | 0.132478 | 0.0143149 | 0.349459 |
CAR5 | Developing grain, bracts removed (5 DPA) | 8.86091 | 9.31373 | 9.35362 | 9.74973 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.53353 | 0.718243 | 2.18069 | 3.33335 |
CDS Structure of MLOC_59906
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59906.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g47960.1 |
-2 |
5e-55 |
180 |
116/160 (73%) |
13107.m05123 protein basic helix-loop-helix domain containing protein, expressed |
TAIR PP10 |
AT2G40435.1 |
-2 |
5e-29 |
110 |
73/152 (48%) |
BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16887048-16888407 FORWARD LENGTH=158 |