MLOC_59888 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.995615.714314.415616.7343
LEAShoots from the seedlings (10 cm shoot stage)17.003617.694519.17715.0142
INF1Young developing inflorescences (5mm)12.254415.662916.633413.8589
INF2Developing inflorescences (1-1.5 cm)16.432716.332918.085520.1308
ROORoots from the seedlings (10 cm shoot stage)26.892923.701626.404829.5743
NODDeveloping tillers at six leaf stage, 3rd internode24.643537.00651.9329123.974
CAR5Developing grain, bracts removed (5 DPA)35.014637.658835.994439.2802
CAR15Developing grain, bracts removed (15 DPA)64.389663.865751.5424160.326



CDS Structure of MLOC_59888






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59888.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353971NoneNoneNoneNone
MLOC_59888.1CUST_4209_PI427708080AvailableAvailablecontig_44004 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g02560.1 -3 3e-148 439 222/350 (63%) 13103.m00218 protein cyclin-like F-box, putative, expressed
TAIR PP10 AT4G00755.2 -3 2e-75 248 145/357 (41%) F-box family protein | chr4:325294-326787 FORWARD LENGTH=377