MLOC_59872 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.261512.021514.043713.5632
LEAShoots from the seedlings (10 cm shoot stage)11.154311.25118.553310.4526
INF1Young developing inflorescences (5mm)25.975328.972831.420124.4765
INF2Developing inflorescences (1-1.5 cm)24.012124.172724.085426.053
ROORoots from the seedlings (10 cm shoot stage)31.858220.271817.940823.016
NODDeveloping tillers at six leaf stage, 3rd internode5.120568.6903815.263426.471
CAR5Developing grain, bracts removed (5 DPA)18.825118.218315.975917.0753
CAR15Developing grain, bracts removed (15 DPA)4.016783.30523.844898.84143



CDS Structure of MLOC_59872






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59872.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366568NoneNoneNoneNone
MLOC_59872.1CUST_4207_PI427708080AvailableAvailablecontig_43982 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g57370.1 +2 2e-145 419 225/266 (85%) 13104.m06000 protein acyl-protein thioesterase, putative, expressed
TAIR PP10 AT4G22300.1 +2 5e-114 337 151/211 (72%) | Symbols: SOBER1 | carboxylesterases | chr4:11787560-11789252 REVERSE LENGTH=262