MLOC_59871 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6748430.5246610.5523110.574277
LEAShoots from the seedlings (10 cm shoot stage)0.1933210.1485720.3343430.192287
INF1Young developing inflorescences (5mm)1.274741.434851.485891.23774
INF2Developing inflorescences (1-1.5 cm)1.596341.549072.002251.87905
ROORoots from the seedlings (10 cm shoot stage)0.8961520.8752480.2270690.939301
NODDeveloping tillers at six leaf stage, 3rd internode0.1441680.188450.3256860.665171
CAR5Developing grain, bracts removed (5 DPA)0.5497980.9945780.9905370.868362
CAR15Developing grain, bracts removed (15 DPA)0.3179230.4353990.5519521.02711



CDS Structure of MLOC_59871






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59871.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59871.6CUST_14047_PI427708080AvailableAvailablecontig_43982 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g57380.1 +2 3e-109 326 161/219 (74%) 13104.m06001 protein acyl-protein thioesterase, putative, expressed
TAIR PP10 AT4G22300.1 +2 6e-63 207 101/212 (48%) | Symbols: SOBER1 | carboxylesterases | chr4:11787560-11789252 REVERSE LENGTH=262