MLOC_59862 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.203414.088616.905518.244
LEAShoots from the seedlings (10 cm shoot stage)2.902430.5659140.6311351.14903
INF1Young developing inflorescences (5mm)0.3907520.5593630.475140.482242
INF2Developing inflorescences (1-1.5 cm)0.8735320.5733590.3390250.781571
ROORoots from the seedlings (10 cm shoot stage)37.325425.002338.338337.3993
NODDeveloping tillers at six leaf stage, 3rd internode12.93314.38241.2812533.6792
CAR5Developing grain, bracts removed (5 DPA)9.555778.866918.305810.5329
CAR15Developing grain, bracts removed (15 DPA)0.3426930.5854150.2996141.27947



CDS Structure of MLOC_59862






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59862.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365998NoneNoneNoneNone
MLOC_59862.1CUST_339_PI427708083AvailableAvailablecontig_43976 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g40890.1 -3 2e-96 293 181/279 (65%) 13112.m04260 protein OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT3G04730.1 -3 8e-76 238 139/271 (51%) | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236