MLOC_59842 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.324336.253933.455636.0085
LEAShoots from the seedlings (10 cm shoot stage)34.565635.332423.783829.5708
INF1Young developing inflorescences (5mm)40.218641.461747.271536.3224
INF2Developing inflorescences (1-1.5 cm)50.767345.884650.495255.0565
ROORoots from the seedlings (10 cm shoot stage)18.702529.128926.505838.8781
NODDeveloping tillers at six leaf stage, 3rd internode38.07433.35341.2736145.635
CAR5Developing grain, bracts removed (5 DPA)27.847326.264425.609327.4348
CAR15Developing grain, bracts removed (15 DPA)6.470214.067716.3324112.5388



CDS Structure of MLOC_59842






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59842.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252587.1NoneNoneNoneNone
MLOC_59842.1CUST_4198_PI427708080AvailableAvailablecontig_43963 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51610.2 +1 0.0 522 260/318 (82%) 13102.m05873 protein CRAL/TRIO domain containing protein, expressed
TAIR PP10 AT1G22180.2 +1 2e-109 334 175/302 (58%) Sec14p-like phosphatidylinositol transfer family protein | chr1:7828434-7829745 REVERSE LENGTH=314