MLOC_598 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.18900500.44171
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.05550580.060163600.0603802
INF2Developing inflorescences (1-1.5 cm)0.05745480.054081500.082502
ROORoots from the seedlings (10 cm shoot stage)0.2614440.07179590.3797210.209915
NODDeveloping tillers at six leaf stage, 3rd internode0.09705570.0318780.08917910.139945
CAR5Developing grain, bracts removed (5 DPA)535.819444.486479.744505.507
CAR15Developing grain, bracts removed (15 DPA)33.432338.640453.5655101.645



CDS Structure of MLOC_598






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_598.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_598.1CUST_8188_PI427708083AvailableAvailablecontig_10436 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43010.2 +3 2e-120 355 163/206 (79%) 13102.m04772 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT1G62710.1 +3 1e-110 330 154/206 (75%) | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486