MLOC_59790 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains69.993248.022550.069849.7944
LEAShoots from the seedlings (10 cm shoot stage)78.10615.6911425.311527.1424
INF1Young developing inflorescences (5mm)42.425941.2531.805933.5026
INF2Developing inflorescences (1-1.5 cm)12.872516.785713.475816.2781
ROORoots from the seedlings (10 cm shoot stage)33.691519.928725.150821.1401
NODDeveloping tillers at six leaf stage, 3rd internode0.1487540.05367170.03282850.0933154
CAR5Developing grain, bracts removed (5 DPA)61.265662.923158.03259.2306
CAR15Developing grain, bracts removed (15 DPA)2.063310.6526882.977514.41845



CDS Structure of MLOC_59790






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59790.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248571.1NoneNoneNoneNone
MLOC_59790.1CUST_4189_PI427708080AvailableAvailablecontig_43915 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08790.1 -3 0.0 627 352/415 (85%) 13103.m01017 protein aspartic proteinase nepenthesin precursor, putative, expressed
TAIR PP10 AT1G09750.1 -3 3e-109 338 214/405 (53%) Eukaryotic aspartyl protease family protein | chr1:3157541-3158960 FORWARD LENGTH=449