MLOC_59720 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.443617.066422.434315.1529
LEAShoots from the seedlings (10 cm shoot stage)30.102527.627541.892420.8401
INF1Young developing inflorescences (5mm)31.26235.83337.542719.5047
INF2Developing inflorescences (1-1.5 cm)23.877827.872729.056721.1388
ROORoots from the seedlings (10 cm shoot stage)42.658624.88526.646124.8912
NODDeveloping tillers at six leaf stage, 3rd internode21.460120.44625.790554.9301
CAR5Developing grain, bracts removed (5 DPA)16.103715.821218.848511.3231
CAR15Developing grain, bracts removed (15 DPA)9.631057.8712711.127113.778



CDS Structure of MLOC_59720






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59720.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59720.1CUST_12846_PI427708083AvailableAvailablecontig_438554 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58640.1 +3 5e-59 192 89/90 (99%) 13104.m06164 protein cleavage and polyadenylation specificity factor subunit 5, putative, expressed
TAIR PP10 AT4G25550.1 +3 6e-55 181 80/89 (90%) Cleavage/polyadenylation specificity factor, 25kDa subunit | chr4:13048519-13050873 FORWARD LENGTH=200