MLOC_59709 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8235981.723121.754481.62199
LEAShoots from the seedlings (10 cm shoot stage)1.036360.8126820.9106660.866509
INF1Young developing inflorescences (5mm)2.594432.675113.000892.38112
INF2Developing inflorescences (1-1.5 cm)3.885733.668783.312724.16338
ROORoots from the seedlings (10 cm shoot stage)0.8206730.6638960.8599430.979885
NODDeveloping tillers at six leaf stage, 3rd internode0.1447650.4545990.4095341.62227
CAR5Developing grain, bracts removed (5 DPA)7.848886.14847.38097.23799
CAR15Developing grain, bracts removed (15 DPA)3.376183.497372.128927.43277



CDS Structure of MLOC_59709






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59709.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59709.1CUST_14018_PI427708080AvailableAvailablecontig_43844 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03070.1 +1 0.0 1283 666/799 (83%) 13101.m00256 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT4G11420.1 +1 0.0 1058 543/799 (68%) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987