MLOC_59655 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.538491.038541.153661.28868
LEAShoots from the seedlings (10 cm shoot stage)2.210910.3753180.8408470.983461
INF1Young developing inflorescences (5mm)1.4821.148191.308891.24073
INF2Developing inflorescences (1-1.5 cm)1.9282.556451.992622.7881
ROORoots from the seedlings (10 cm shoot stage)0.4702870.4554620.4618080.594136
NODDeveloping tillers at six leaf stage, 3rd internode0.4690420.5207110.2504561.49747
CAR5Developing grain, bracts removed (5 DPA)1.48281.690721.755471.87719
CAR15Developing grain, bracts removed (15 DPA)0.5516320.5026220.4286151.3556



CDS Structure of MLOC_59655






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59655.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59655.4CUST_14012_PI427708080AvailableAvailablecontig_43796 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62990.1 +1 0.0 751 396/487 (81%) 13101.m06758 protein ATROPGEF7/ROPGEF7, putative, expressed
TAIR PP10 AT5G02010.1 +1 0.0 554 288/422 (68%) | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide exchange factor 7 | chr5:383493-385698 FORWARD LENGTH=546