MLOC_59653 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.891373.805093.585084.07458
LEAShoots from the seedlings (10 cm shoot stage)2.72731.171281.087311.30001
INF1Young developing inflorescences (5mm)2.437093.425253.153492.76411
INF2Developing inflorescences (1-1.5 cm)2.278912.293522.713522.82013
ROORoots from the seedlings (10 cm shoot stage)7.552354.615684.111825.03899
NODDeveloping tillers at six leaf stage, 3rd internode6.369319.135999.7429622.7154
CAR5Developing grain, bracts removed (5 DPA)6.901477.903328.429918.12491
CAR15Developing grain, bracts removed (15 DPA)0.6697540.893150.8798172.12826



CDS Structure of MLOC_59653






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59653.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59653.1CUST_14011_PI427708080AvailableAvailablecontig_43795 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28660.1 -3 3e-144 431 224/303 (74%) 13109.m02828 protein gibberellin receptor GID1L2, putative, expressed
TAIR PP10 AT3G48690.1 -3 2e-65 223 131/319 (41%) | Symbols: ATCXE12, CXE12 | alpha/beta-Hydrolases superfamily protein | chr3:18037186-18038160 REVERSE LENGTH=324