MLOC_59636 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.822110.365312.417212.0183
LEAShoots from the seedlings (10 cm shoot stage)8.9585710.245112.85098.35558
INF1Young developing inflorescences (5mm)17.519418.728220.644515.3263
INF2Developing inflorescences (1-1.5 cm)18.517418.929920.026820.0925
ROORoots from the seedlings (10 cm shoot stage)15.731115.610513.557816.3419
NODDeveloping tillers at six leaf stage, 3rd internode14.641818.694224.733255.2216
CAR5Developing grain, bracts removed (5 DPA)19.321119.823619.66118.1456
CAR15Developing grain, bracts removed (15 DPA)5.071374.253054.6980310.8048



CDS Structure of MLOC_59636






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59636.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59636.1CUST_12844_PI427708083AvailableAvailablecontig_43780 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g11060.1 +2 1e-29 119 60/89 (67%) 13102.m01246 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT3G15610.1 +2 9e-26 107 51/76 (67%) Transducin/WD40 repeat-like superfamily protein | chr3:5291076-5292796 REVERSE LENGTH=341