MLOC_59602 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains32.382735.473839.921535.6693
LEAShoots from the seedlings (10 cm shoot stage)29.96233.176527.344826.0827
INF1Young developing inflorescences (5mm)39.840344.69645.917235.615
INF2Developing inflorescences (1-1.5 cm)41.33144.14548.948347.1999
ROORoots from the seedlings (10 cm shoot stage)17.389133.875931.718738.3968
NODDeveloping tillers at six leaf stage, 3rd internode42.969636.56754.9625140.833
CAR5Developing grain, bracts removed (5 DPA)41.630443.78648.618842.4851
CAR15Developing grain, bracts removed (15 DPA)12.900811.824911.561427.0122



CDS Structure of MLOC_59602






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59602.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252880.1NoneNoneNoneNone
MLOC_59602.1CUST_4168_PI427708080AvailableAvailablecontig_43753 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40810.1 +1 2e-173 502 249/373 (67%) 13102.m04550 protein Zinc finger, ZZ type domain containing protein, expressed
TAIR PP10 AT3G24800.1 +1 2e-98 308 165/344 (48%) | Symbols: PRT1 | proteolysis 1 | chr3:9055653-9057795 FORWARD LENGTH=410