MLOC_59600 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.034286700.0936407
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.01724160.01920140.107625
CAR5Developing grain, bracts removed (5 DPA)0.2840410.1783810.2570980.291505
CAR15Developing grain, bracts removed (15 DPA)00.030451700.134764



CDS Structure of MLOC_59600






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59600.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59600.1CUST_14005_PI427708080AvailableAvailablecontig_43750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32230.1 -1 2e-107 323 163/236 (69%) 13109.m03201 protein vignain precursor, putative, expressed
TAIR PP10 AT5G45890.1 -1 3e-64 211 109/238 (46%) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346