MLOC_59580 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.316538.1234.703934.9569
LEAShoots from the seedlings (10 cm shoot stage)30.322835.981444.064931.6862
INF1Young developing inflorescences (5mm)18.327216.793316.04514.1181
INF2Developing inflorescences (1-1.5 cm)16.737817.996118.575519.1947
ROORoots from the seedlings (10 cm shoot stage)31.345741.173930.04247.8308
NODDeveloping tillers at six leaf stage, 3rd internode21.215316.136717.732755.6821
CAR5Developing grain, bracts removed (5 DPA)32.925833.573733.351232.4029
CAR15Developing grain, bracts removed (15 DPA)10.155310.928211.448423.4915



CDS Structure of MLOC_59580






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59580.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363896NoneNoneNoneNone
MLOC_59580.1CUST_4164_PI427708080AvailableAvailablecontig_43734 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g12560.2 -1 0.0 748 406/469 (87%) 13109.m01137 protein ferrochelatase-2, chloroplast precursor, putative, expressed
TAIR PP10 AT5G26030.2 -1 0.0 559 287/379 (76%) | Symbols: FC1, FC-I, ATFC-I | ferrochelatase 1 | chr5:9096675-9098752 FORWARD LENGTH=466