MLOC_59542 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.526994.603243.935924.21539
LEAShoots from the seedlings (10 cm shoot stage)6.105036.606525.722335.62926
INF1Young developing inflorescences (5mm)10.755210.33229.330638.96218
INF2Developing inflorescences (1-1.5 cm)20.320520.645119.48322.5853
ROORoots from the seedlings (10 cm shoot stage)4.457527.22734.91688.81318
NODDeveloping tillers at six leaf stage, 3rd internode4.963646.314815.4434121.9613
CAR5Developing grain, bracts removed (5 DPA)13.172112.953913.259213.0699
CAR15Developing grain, bracts removed (15 DPA)3.333073.185063.450257.58383



CDS Structure of MLOC_59542






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59542.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359135NoneNoneNoneNone
MLOC_59542.1CUST_4157_PI427708080AvailableAvailablecontig_43702 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g59620.1 +1 0.0 1011 538/743 (72%) 13101.m06339 protein histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
TAIR PP10 AT5G04940.2 +1 2e-172 521 258/519 (50%) | Symbols: SUVH1 | SU(VAR)3-9 homolog 1 | chr5:1454616-1456628 REVERSE LENGTH=670