- Predicted Gene MLOC_59542
MLOC_59542 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.52699 | 4.60324 | 3.93592 | 4.21539 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 6.10503 | 6.60652 | 5.72233 | 5.62926 |
INF1 | Young developing inflorescences (5mm) | 10.7552 | 10.3322 | 9.33063 | 8.96218 |
INF2 | Developing inflorescences (1-1.5 cm) | 20.3205 | 20.6451 | 19.483 | 22.5853 |
ROO | Roots from the seedlings (10 cm shoot stage) | 4.45752 | 7.2273 | 4.9168 | 8.81318 |
NOD | Developing tillers at six leaf stage, 3rd internode | 4.96364 | 6.31481 | 5.44341 | 21.9613 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.1721 | 12.9539 | 13.2592 | 13.0699 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.33307 | 3.18506 | 3.45025 | 7.58383 |
CDS Structure of MLOC_59542
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59542.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g59620.1 |
+1 |
0.0 |
1011 |
538/743 (72%) |
13101.m06339 protein histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
TAIR PP10 |
AT5G04940.2 |
+1 |
2e-172 |
521 |
258/519 (50%) |
| Symbols: SUVH1 | SU(VAR)3-9 homolog 1 | chr5:1454616-1456628 REVERSE LENGTH=670 |