MLOC_59531 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.165225.824621.182825.9479
LEAShoots from the seedlings (10 cm shoot stage)46.490940.11632.150737.1221
INF1Young developing inflorescences (5mm)23.473220.584223.281320.2598
INF2Developing inflorescences (1-1.5 cm)18.491418.683117.34721.8564
ROORoots from the seedlings (10 cm shoot stage)4.6682511.04528.1787813.9355
NODDeveloping tillers at six leaf stage, 3rd internode11.262611.365916.283445.6554
CAR5Developing grain, bracts removed (5 DPA)14.216812.39314.656714.7201
CAR15Developing grain, bracts removed (15 DPA)3.992713.640324.429489.84287



CDS Structure of MLOC_59531






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59531.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59531.1CUST_13992_PI427708080AvailableAvailablecontig_43692 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g09270.1 +3 0.0 919 490/611 (80%) 13108.m00976 protein pentatricopeptide, putative, expressed
TAIR PP10 AT3G59040.1 +3 0.0 672 328/482 (68%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21821495-21824233 REVERSE LENGTH=583