MLOC_59520 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.351753.406473.343743.4957
LEAShoots from the seedlings (10 cm shoot stage)4.655035.089295.413674.24985
INF1Young developing inflorescences (5mm)3.584724.321864.261623.47739
INF2Developing inflorescences (1-1.5 cm)4.628324.380964.820595.16074
ROORoots from the seedlings (10 cm shoot stage)4.248135.615766.273846.54012
NODDeveloping tillers at six leaf stage, 3rd internode3.775334.784727.0066716.3301
CAR5Developing grain, bracts removed (5 DPA)6.292146.413836.702376.50721
CAR15Developing grain, bracts removed (15 DPA)4.779664.163384.2960210.7403



CDS Structure of MLOC_59520






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59520.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252517.1NoneNoneNoneNone
AK372265NoneNoneNoneNone
MLOC_59520.2CUST_4152_PI427708080AvailableAvailablecontig_43682 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41330.1 +3 0.0 922 487/657 (74%) 13104.m04055 protein expressed protein
TAIR PP10 AT2G43250.1 +3 2e-150 461 273/656 (42%) unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17977619-17979496 FORWARD LENGTH=625