MLOC_59507 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.463225.392275.244335.03926
LEAShoots from the seedlings (10 cm shoot stage)5.301894.318153.238983.43579
INF1Young developing inflorescences (5mm)5.873377.029366.511385.12127
INF2Developing inflorescences (1-1.5 cm)5.945146.295956.342796.41977
ROORoots from the seedlings (10 cm shoot stage)2.382112.614613.930022.94095
NODDeveloping tillers at six leaf stage, 3rd internode7.11385.686067.1492417.9541
CAR5Developing grain, bracts removed (5 DPA)4.17276.102384.801814.65293
CAR15Developing grain, bracts removed (15 DPA)0.7322020.5791020.8070121.54016



CDS Structure of MLOC_59507






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59507.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357325NoneNoneNoneNone
MLOC_59507.3CUST_4148_PI427708080AvailableAvailablecontig_43671 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g05790.1 -3 5e-132 393 198/226 (88%) 13108.m00570 protein caffeoyl-CoA O-methyltransferase, putative, expressed
TAIR PP10 AT3G62000.1 -3 9e-112 338 169/223 (76%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:22959441-22961180 REVERSE LENGTH=278