MLOC_59505 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3821280.2555950.3204120.332691
LEAShoots from the seedlings (10 cm shoot stage)00.1468960.06550730.108408
INF1Young developing inflorescences (5mm)0.1373870.1527610.2607580.163047
INF2Developing inflorescences (1-1.5 cm)0.6571331.243511.088241.18098
ROORoots from the seedlings (10 cm shoot stage)00.067069200.20355
NODDeveloping tillers at six leaf stage, 3rd internode0.361980.4003070.2754281.2929
CAR5Developing grain, bracts removed (5 DPA)23.610422.331120.089622.9047
CAR15Developing grain, bracts removed (15 DPA)1.093710.9895391.261612.78772



CDS Structure of MLOC_59505






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59505.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59505.1CUST_13988_PI427708080AvailableAvailablecontig_43671 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g05820.1 +3 0.0 993 490/571 (86%) 13108.m00575 protein monocopper oxidase, putative, expressed
TAIR PP10 AT4G12420.2 +3 0.0 718 352/563 (63%) | Symbols: SKU5 | Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587