MLOC_59501 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6300490.9134260.6168290.816618
LEAShoots from the seedlings (10 cm shoot stage)0.8366621.267641.189090.969928
INF1Young developing inflorescences (5mm)2.44472.230022.040371.93657
INF2Developing inflorescences (1-1.5 cm)1.644131.422741.651071.71363
ROORoots from the seedlings (10 cm shoot stage)0.6726040.6565540.9081720.885676
NODDeveloping tillers at six leaf stage, 3rd internode00.02358290.03761830.135358
CAR5Developing grain, bracts removed (5 DPA)0.8606371.065761.02460.980446
CAR15Developing grain, bracts removed (15 DPA)0.5179520.5021320.2826491.10542



CDS Structure of MLOC_59501






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59501.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375016NoneNoneNoneNone
MLOC_59501.1CUST_4146_PI427708080AvailableAvailablecontig_43666 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42880.1 -1 0.0 764 409/551 (74%) 13107.m04493 protein PPR repeat containing protein, expressed
TAIR PP10 AT4G28010.1 -1 2e-99 327 186/520 (36%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13930379-13932493 FORWARD LENGTH=704