MLOC_59488 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.544038.696118.808286.22236
LEAShoots from the seedlings (10 cm shoot stage)9.029335.869566.978064.9623
INF1Young developing inflorescences (5mm)22.810120.393421.0314.6002
INF2Developing inflorescences (1-1.5 cm)18.19916.164716.648915.0249
ROORoots from the seedlings (10 cm shoot stage)7.945311.280911.42228.84076
NODDeveloping tillers at six leaf stage, 3rd internode2.839521.623714.840644.94599
CAR5Developing grain, bracts removed (5 DPA)16.50315.438319.601812.5003
CAR15Developing grain, bracts removed (15 DPA)6.879737.302566.4531313.1764



CDS Structure of MLOC_59488






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59488.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59488.1CUST_12840_PI427708083AvailableAvailablecontig_436596 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g43890.1 -1 2e-48 178 120/160 (75%) 13103.m04721 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT5G58230.1 -1 1e-42 160 85/102 (83%) | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 repeat-like superfamily protein | chr5:23556112-23557994 FORWARD LENGTH=424