MLOC_59487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains53.709964.753863.847665.7762
LEAShoots from the seedlings (10 cm shoot stage)4.251139.175893.189944.84345
INF1Young developing inflorescences (5mm)3.003892.822511.41562.2698
INF2Developing inflorescences (1-1.5 cm)0.9971041.340561.010841.36052
ROORoots from the seedlings (10 cm shoot stage)17.356817.68216.493822.1727
NODDeveloping tillers at six leaf stage, 3rd internode7.6247213.270422.657547.9439
CAR5Developing grain, bracts removed (5 DPA)39.178739.103738.337541.0626
CAR15Developing grain, bracts removed (15 DPA)2.574052.076022.290915.89409



CDS Structure of MLOC_59487






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366482NoneNoneNoneNone
MLOC_59487.1CUST_4145_PI427708080AvailableAvailablecontig_43659 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g38710.1 +1 0.0 1322 636/754 (84%) 13108.m04109 protein uncharacterized glycosyltransferase, putative, expressed
TAIR PP10 AT1G55740.1 +1 0.0 1109 533/754 (71%) | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:20835507-20838707 REVERSE LENGTH=754